Circulation of Alphacoronavirus, Betacoronavirus and Paramyxovirus in Hipposideros bat species in Zimbabwe.
Identifieur interne : 000078 ( France/Analysis ); précédent : 000077; suivant : 000079Circulation of Alphacoronavirus, Betacoronavirus and Paramyxovirus in Hipposideros bat species in Zimbabwe.
Auteurs : Mathieu Bourgarel [France] ; Davies M. Pfukenyi [Zimbabwe] ; Vanina Boué [France] ; Loïc Talignani [France] ; Ngoni Chiweshe [Zimbabwe] ; Fodé Diop [France] ; Alexandre Caron [Mozambique] ; Gift Matope [Zimbabwe] ; Dorothée Missé [France] ; Florian Liégeois [France]Source :
- Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [ 1567-7257 ] ; 2018.
Descripteurs français
- KwdFr :
- Animaux, Chiroptera (virologie), Génome viral, Infections à Paramyxoviridae (médecine vétérinaire), Infections à coronavirus (médecine vétérinaire), Maladies transmissibles émergentes (médecine vétérinaire), Paramyxoviridae (), Paramyxoviridae (génétique), Phylogénie, Variation génétique, Zimbabwe, Évolution moléculaire.
- MESH :
- génétique : Paramyxoviridae.
- médecine vétérinaire : Infections à Paramyxoviridae, Infections à coronavirus, Maladies transmissibles émergentes.
- virologie : Chiroptera.
- Animaux, Génome viral, Paramyxoviridae, Phylogénie, Variation génétique, Zimbabwe, Évolution moléculaire.
- Wicri :
- geographic : Zimbabwe.
English descriptors
- KwdEn :
- Alphacoronavirus (classification), Alphacoronavirus (genetics), Animals, Betacoronavirus (classification), Betacoronavirus (genetics), Chiroptera (virology), Communicable Diseases, Emerging (veterinary), Coronavirus Infections (veterinary), Evolution, Molecular, Genetic Variation, Genome, Viral, Paramyxoviridae (classification), Paramyxoviridae (genetics), Paramyxoviridae Infections (veterinary), Phylogeny, Zimbabwe.
- MESH :
- geographic : Zimbabwe.
- classification : Alphacoronavirus, Betacoronavirus, Paramyxoviridae.
- genetics : Alphacoronavirus, Betacoronavirus, Paramyxoviridae.
- veterinary : Communicable Diseases, Emerging, Coronavirus Infections, Paramyxoviridae Infections.
- virology : Chiroptera.
- Animals, Evolution, Molecular, Genetic Variation, Genome, Viral, Phylogeny.
Abstract
Bats carry a great diversity of zoonotic viruses with a high-impact on human health and livestock. Since the emergence of new coronaviruses and paramyxoviruses in humans (e.g. Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) and Nipah virus), numerous studies clearly established that bats can maintain some of these viruses. Improving our understanding on the role of bats in the epidemiology of the pathogens they harbour is necessary to prevent cross-species spill over along the wild/domestic/human gradient. In this study, we screened bat faecal samples for the presence of Coronavirus and Paramyxovirus in two caves frequently visited by local people to collect manure and/or to hunt bats in Zimbabwe. We amplified partial RNA-dependent RNA polymerase genes of Alpha and Betacoronavirus together with the partial polymerase gene of Paramyxovirus. Identified coronaviruses were related to pathogenic human strains and the paramyxovirus belonged to the recently described Jeilongvirus genus. Our results highlighted the importance of monitoring virus circulation in wildlife, especially bats, in the context of intense human-wildlife interfaces in order to strengthen prevention measures among local populations and to implement sentinel surveillance in sites with high zoonotic diseases transmission potential.
DOI: 10.1016/j.meegid.2018.01.007
PubMed: 29331670
Affiliations:
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pubmed:29331670Le document en format XML
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Montpellier, CIRAD, INRA, Montpellier, France. Electronic address: mathieu.bourgarel@cirad.com.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR ASTRE, RP-PCP, Harare, Zimbabwe; ASTRE, Univ. Montpellier, CIRAD, INRA, Montpellier</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Pfukenyi, Davies M" sort="Pfukenyi, Davies M" uniqKey="Pfukenyi D" first="Davies M" last="Pfukenyi">Davies M. Pfukenyi</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Veterinary Science, University of Zimbabwe, P.O. Box MP167, Mt. Pleasant Harare, Zimbabwe.</nlm:affiliation><country xml:lang="fr">Zimbabwe</country><wicri:regionArea>Faculty of Veterinary Science, University of Zimbabwe, P.O. Box MP167, Mt. Pleasant Harare</wicri:regionArea><wicri:noRegion>Mt. Pleasant Harare</wicri:noRegion></affiliation></author><author><name sortKey="Boue, Vanina" sort="Boue, Vanina" uniqKey="Boue V" first="Vanina" last="Boué">Vanina Boué</name><affiliation wicri:level="3"><nlm:affiliation>MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Talignani, Loic" sort="Talignani, Loic" uniqKey="Talignani L" first="Loïc" last="Talignani">Loïc Talignani</name><affiliation wicri:level="3"><nlm:affiliation>MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier, France. Electronic address: loic.talignani@ird.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Chiweshe, Ngoni" sort="Chiweshe, Ngoni" uniqKey="Chiweshe N" first="Ngoni" last="Chiweshe">Ngoni Chiweshe</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR ASTRE, RP-PCP, Harare, Zimbabwe.</nlm:affiliation><country xml:lang="fr">Zimbabwe</country><wicri:regionArea>CIRAD, UMR ASTRE, RP-PCP, Harare</wicri:regionArea><wicri:noRegion>Harare</wicri:noRegion></affiliation></author><author><name sortKey="Diop, Fode" sort="Diop, Fode" uniqKey="Diop F" first="Fodé" last="Diop">Fodé Diop</name><affiliation wicri:level="3"><nlm:affiliation>MIVEGEC, IRD, CNRS, Univ. 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Electronic address: alexandre.caron@cirad.fr.</nlm:affiliation><country xml:lang="fr">Mozambique</country><wicri:regionArea>CIRAD, UMR ASTRE, RP-PCP, Harare, Zimbabwe; CIRAD, UMR ASTRE, RP-PCP, Maputo, Mozambique; Faculdade de Veterinária, Universidade Eduardo Mondlane, Maputo</wicri:regionArea><wicri:noRegion>Maputo</wicri:noRegion></affiliation></author><author><name sortKey="Matope, Gift" sort="Matope, Gift" uniqKey="Matope G" first="Gift" last="Matope">Gift Matope</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Veterinary Science, University of Zimbabwe, P.O. Box MP167, Mt. Pleasant Harare, Zimbabwe.</nlm:affiliation><country xml:lang="fr">Zimbabwe</country><wicri:regionArea>Faculty of Veterinary Science, University of Zimbabwe, P.O. Box MP167, Mt. Pleasant Harare</wicri:regionArea><wicri:noRegion>Mt. Pleasant Harare</wicri:noRegion></affiliation></author><author><name sortKey="Misse, Dorothee" sort="Misse, Dorothee" uniqKey="Misse D" first="Dorothée" last="Missé">Dorothée Missé</name><affiliation wicri:level="3"><nlm:affiliation>MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier, France. Electronic address: dorothee.misse@ird.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Liegeois, Florian" sort="Liegeois, Florian" uniqKey="Liegeois F" first="Florian" last="Liégeois">Florian Liégeois</name><affiliation wicri:level="3"><nlm:affiliation>MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier, France. Electronic address: florian.liegeois@ird.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Languedoc-Roussillon</region><settlement type="city">Montpellier</settlement></placeName></affiliation></author></analytic><series><title level="j">Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases</title><idno type="eISSN">1567-7257</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alphacoronavirus (classification)</term><term>Alphacoronavirus (genetics)</term><term>Animals</term><term>Betacoronavirus (classification)</term><term>Betacoronavirus (genetics)</term><term>Chiroptera (virology)</term><term>Communicable Diseases, Emerging (veterinary)</term><term>Coronavirus Infections (veterinary)</term><term>Evolution, Molecular</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Paramyxoviridae (classification)</term><term>Paramyxoviridae (genetics)</term><term>Paramyxoviridae Infections (veterinary)</term><term>Phylogeny</term><term>Zimbabwe</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Chiroptera (virologie)</term><term>Génome viral</term><term>Infections à Paramyxoviridae (médecine vétérinaire)</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Maladies transmissibles émergentes (médecine vétérinaire)</term><term>Paramyxoviridae ()</term><term>Paramyxoviridae (génétique)</term><term>Phylogénie</term><term>Variation génétique</term><term>Zimbabwe</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Zimbabwe</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Alphacoronavirus</term><term>Betacoronavirus</term><term>Paramyxoviridae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Alphacoronavirus</term><term>Betacoronavirus</term><term>Paramyxoviridae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Paramyxoviridae</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à Paramyxoviridae</term><term>Infections à coronavirus</term><term>Maladies transmissibles émergentes</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Communicable Diseases, Emerging</term><term>Coronavirus Infections</term><term>Paramyxoviridae Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Evolution, Molecular</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Génome viral</term><term>Paramyxoviridae</term><term>Phylogénie</term><term>Variation génétique</term><term>Zimbabwe</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Zimbabwe</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Bats carry a great diversity of zoonotic viruses with a high-impact on human health and livestock. Since the emergence of new coronaviruses and paramyxoviruses in humans (e.g. Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) and Nipah virus), numerous studies clearly established that bats can maintain some of these viruses. Improving our understanding on the role of bats in the epidemiology of the pathogens they harbour is necessary to prevent cross-species spill over along the wild/domestic/human gradient. In this study, we screened bat faecal samples for the presence of Coronavirus and Paramyxovirus in two caves frequently visited by local people to collect manure and/or to hunt bats in Zimbabwe. We amplified partial RNA-dependent RNA polymerase genes of Alpha and Betacoronavirus together with the partial polymerase gene of Paramyxovirus. Identified coronaviruses were related to pathogenic human strains and the paramyxovirus belonged to the recently described Jeilongvirus genus. Our results highlighted the importance of monitoring virus circulation in wildlife, especially bats, in the context of intense human-wildlife interfaces in order to strengthen prevention measures among local populations and to implement sentinel surveillance in sites with high zoonotic diseases transmission potential.</div></front></TEI><affiliations><list><country><li>France</li><li>Mozambique</li><li>Zimbabwe</li></country><region><li>Languedoc-Roussillon</li><li>Occitanie (région administrative)</li></region><settlement><li>Montpellier</li></settlement></list><tree><country name="France"><region name="Occitanie (région administrative)"><name sortKey="Bourgarel, Mathieu" sort="Bourgarel, Mathieu" uniqKey="Bourgarel M" first="Mathieu" last="Bourgarel">Mathieu Bourgarel</name></region><name sortKey="Boue, Vanina" sort="Boue, Vanina" uniqKey="Boue V" first="Vanina" last="Boué">Vanina Boué</name><name sortKey="Diop, Fode" sort="Diop, Fode" uniqKey="Diop F" first="Fodé" last="Diop">Fodé Diop</name><name sortKey="Liegeois, Florian" sort="Liegeois, Florian" uniqKey="Liegeois F" first="Florian" last="Liégeois">Florian Liégeois</name><name sortKey="Misse, Dorothee" sort="Misse, Dorothee" uniqKey="Misse D" first="Dorothée" last="Missé">Dorothée Missé</name><name sortKey="Talignani, Loic" sort="Talignani, Loic" uniqKey="Talignani L" first="Loïc" last="Talignani">Loïc Talignani</name></country><country name="Zimbabwe"><noRegion><name sortKey="Pfukenyi, Davies M" sort="Pfukenyi, Davies M" uniqKey="Pfukenyi D" first="Davies M" last="Pfukenyi">Davies M. Pfukenyi</name></noRegion><name sortKey="Chiweshe, Ngoni" sort="Chiweshe, Ngoni" uniqKey="Chiweshe N" first="Ngoni" last="Chiweshe">Ngoni Chiweshe</name><name sortKey="Matope, Gift" sort="Matope, Gift" uniqKey="Matope G" first="Gift" last="Matope">Gift Matope</name></country><country name="Mozambique"><noRegion><name sortKey="Caron, Alexandre" sort="Caron, Alexandre" uniqKey="Caron A" first="Alexandre" last="Caron">Alexandre Caron</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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